DNA - based molecular Research needs for
standardization and |
Peter
Walker1Rohana Subasinghe2 CSIRO Tropical Agriculture1 PMB3 Indooroopilly Queensland 4068 Australia Fishery Resource Division2 |
During 7-9 February 1999, FAO in collaboration with NACA, ACIAR, CSIRO, and DFID conducted an Expert Workshop on DNA-based Molecular Diagnostic Techniques: Research Needs for Standardization and Validation of the Detection of Aquatic Animal Pathogens and Diseases. Twenty-two experts, most of them who are currently working on the development of DNA-based rapid diagnostic techniques for the detection of aquatic animal pathogens, and representatives from other concerned agencies participated in this workshop which was held at NACA Headquarters (Bangkok, Thailand). The workshop comprised a series of papers on issues related to the use and limitations of DNA-based diagnostic technologies and related research needs, and a series of selected focus groups considering finfish, mollusc and shrimp pathogens. The report of the workshop together with the review papers are being published as a FAO Fisheries Technical Report. This article outlines the background and the major findings and recommendations from the workshop. |
Impact of disease on aquaculture Disease
outbreaks are recognized as a significant constraint to aquaculture production and trade,
affecting both the economic development and socioeconomic revenue of the sector in many
countries in the world. Disease is now recognized as the primary limiting factor for
shrimp farming today, and the impact of aquatic animal diseases on sustainable rural
livelihoods also been duly recognized among the communities where aquaculture plays a role
in rural development. Various factors have been related to the apparent increased
incidence of disease. Environmental factors and poor water quality, sometimes resulting
from increased self-pollution due to effluent discharge and pathogen transfer via
movements of aquatic organisms, appear to be an important underlying cause of such
epizootics. |
and polymerase chain reaction (PCR) amplification techniques. The
use of DNA-based methods derives from the premise that each species of pathogen carries
unique DNA or RNA sequences that differentiate it from other organisms. The techniques
offer high sensitivity and specificity, and diagnostic kits allowing rapid screening for
the presence of pathogen DNA are moving rapidly from development in specialized
laboratories to routine application. DNA probes are expected to find increasing use in
routine disease monitoring and treatment programmes in aquaculture, in field epidemiology
and in efforts to prevent the international spread of pathogens. |
capture fisheries. There is considerable potential to apply
DNA-based methods for OIE testing if they can meet the stringent criteria of a
standardized, validated, accurate, reliable and accessible diagnostic technique.
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Figure 2. Fluorescense Antibody Test
The expert workshop Key outcomes and recommendations General comments There is considerable scope for more effective use of DNA-based methods of pathogen detection and disease diagnosis in Asia-Pacific aquaculture. However, implementation of standardized practices that produce reliable, useful and comparable data will require a significant investment in research, training and infrastructure development. Effective implementation will also be assisted by enhanced communication between aquatic animal health practitioners in the region and scientists with expertise in disease diagnosis and pathogen detection. Although there are some common themes, it is also evident that there are significant differences in the |
current relevance of DNA-based methods of pathogen detection for the
different aquaculture sectors. DNA-based methods are particularly suitable for detection
and diagnosis of shrimp and mollusc pathogens because of the absence of an antibody
response in invertebrates and lack of suitable cell lines for virus cultivation. In
shrimp, the primary pathogens are well known and many DNA-based methods have already been
developed. However, in molluscs there is very limited knowledge of pathogens and few
diagnostic procedures of any kind are being employed in the Asia-Pacific region. In fish,
antibody and culture-based diagnostic methods are available and considered to be robust
and effective for routine diagnostic applications. As such, DNA-based methods in fish
appear to be most suitable for confirmatory diagnosis and rapid screening of low level or
unapparent infections. To achieve maximum impact, it is essential that research and
training programmes recognize these differences and are tailored to reflect current levels
of knowledge and sector-specific needs. |
based test protocols can be implemented for disease diagnosis and
pathogen detection in the major aquaculture sectors in the Asia-Pacific region. Research
needs vary for each pathogen depending on the existing knowledge base and state of the
technology.
Programme B: Development and validation of DNA-based diagnostic
and detection methods for diseases of aquaculture in the Asian region.
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Training needs
Communication needs
International standardization |
Recommendation. FAO/NACA should develop a programme of accreditation of standard DNA-based tests and laboratories with the required standards of operation and expertise to conduct the tests effectively. The programme should be administered by NACA through pathogen-specific reference laboratories with the following functions:
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References |
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