An assessment of seven innovation case studies in Pakistan in 2022 found that agriculture innovation systems show limited collaboration and networking, and a supply-driven rather than market driven approach to innovation. This limits the potential for scaling innovations such as the ‘Super Seeder’, a machine that sows wheat directly in the rice stubble, replacing the common practice of burning it.The study was conducted in September and October 2022 as part of the global TAP-AIS project coordinated by FAO’s Office of Innovation and funded by the European Union’s DeSIRA initiative. The seven innovation case studies were nominated by key organizations under three thematic area: digital transformation, product innovation and service innovation. A desk review, focus group discussions, key informant interviews and a self-assessment questionnaire was used to collect data. Major gaps identified included, among others: i) Innovation actors have limited organizational support and ability to initiate collaboration and engage in networking with other actors for the purposes of market formation and scaling innovation; ii) Collaboration was not pursued for all stages of innovation, that is, from innovation development to innovation scaling; and iii) A supply-driven approach tends to be used for innovation development and scaling, rather than a market-driven approach. The results of the assessment informed the next phase of the TAP-AIS project in Pakistan in 2023–2024, which includes organizational capacity development and a policy dialogue process to strengthen innovation systems for low-cost agricultural machinery for smallholders. The work contributes to the TAP-AIS project’s main objective to strengthen capacities to innovate in national agriculture innovation systems (AIS) in the context of climate-relevant, productive, and sustainable transformation of agriculture and food systems.